GLYCAM-Web | Utilities for molecular modeling of carbohydrates

GLYCAM-Web | Utilities for molecular modeling of carbohydrates

What glycans bind to my protein?

Scenario.

Predict ligands (I have a co-complex)

Predict ligands (I don't have a co-complex)

What are the shapes of my glycan?

Scenario

Generate 3D structure

Generate files for crystallography

Calculate NMR observables

Generate files for an MD simulation

Let Glycam-Web perform my MD simulation

How does glycosylation affect my protein?

Scenario

I don't have a 3D protein structure (Suggest Modeler)

Predict 3D structure of glycoprotein

Predict shielding by glycans

Calculate antibody accessibility

How does my glycan bind to its antibody?

Scenario

Predict antibody binding

Determine the important residues (I have a co-complex)

Determine the important residues (I don't have a co-complex)

What are the NMR properties of my glycan?

Scenario

Calculate NMR observables

Generate files for an MD simulation

Search for glycans in the PDB.

Scenario

glycoPDB search

Check the quality of my 3D structure.

Scenario

Glyprobity